Installation¶
The OpenMiChroM library can be installed via conda or pip, or compiled from source (GitHub).
Install via conda¶
The code below will install OpenMiChroM from conda-forge.
conda install -c conda-forge OpenMiChroM
Hint
Often, the installation via conda happens to be stuck. If this is the case, it is recommended to update conda/anaconda using the command line below and try to install OpenMiChroM again.
conda update --prefix /path/to/anaconda3/ anaconda
Install via pip¶
The code below will install OpenMiChroM from PyPI.
pip3 install OpenMiChroM
The OpenMiChroM library uses OpenMM API to run the chromatin dynamics simulations. These requirements can be met by installing the OpenMM package from the conda-forge channel:
conda install -c conda-forge openmm
The following are libraries required for installing OpenMiChroM: